Sevir.9G136800.1

Description : ZIM-like 1

Gene families : OG_01_0002680 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002680_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G136800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G136800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_156
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_109

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	ISM	GOs from InterProScan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR010399	Tify_dom	SMART	67	102
IPR010402	CCT_domain	Pfam	136	176
IPR000679	Znf_GATA	Pfam	208	244
IPR000679	Znf_GATA	ProSitePatterns	208	235
IPR013088	Znf_NHR/GATA	Gene3D	202	256
IPR010399	Tify_dom	ProSiteProfiles	67	102
IPR010399	Tify_dom	Pfam	70	101
IPR010402	CCT_domain	ProSiteProfiles	136	178
IPR000679	Znf_GATA	CDD	207	263
IPR045280	TIFY-like	PANTHER	25	285
IPR000679	Znf_GATA	SMART	202	255

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.9G136800.1

Expression Profile

Co-expression Networks

Functional Annotation