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  5. Sevir.9G150100.1

Sevir.9G150100.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016566 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016566_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G150100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G150100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_43


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 479 509
IPR011990 TPR-like_helical_dom_sf Gene3D 406 463
IPR011990 TPR-like_helical_dom_sf Gene3D 78 147
IPR011990 TPR-like_helical_dom_sf Gene3D 464 558
IPR032867 DYW_dom Pfam 683 807
IPR002885 Pentatricopeptide_rpt Pfam 309 339
IPR002885 Pentatricopeptide_rpt Pfam 585 608
IPR002885 Pentatricopeptide_rpt Pfam 482 509
IPR002885 Pentatricopeptide_rpt Pfam 383 406
IPR002885 Pentatricopeptide_rpt Pfam 204 230
IPR002885 Pentatricopeptide_rpt Pfam 408 456
IPR002885 Pentatricopeptide_rpt Pfam 100 147
IPR002885 Pentatricopeptide_rpt Pfam 510 557
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 101 135
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 307 341
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 409 443
IPR002885 Pentatricopeptide_rpt TIGRFAM 383 407
IPR002885 Pentatricopeptide_rpt TIGRFAM 411 445
IPR002885 Pentatricopeptide_rpt TIGRFAM 104 136
IPR002885 Pentatricopeptide_rpt TIGRFAM 482 512
IPR002885 Pentatricopeptide_rpt TIGRFAM 309 340
IPR002885 Pentatricopeptide_rpt TIGRFAM 512 545
IPR002885 Pentatricopeptide_rpt TIGRFAM 547 580
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 378 408
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 510 544
IPR011990 TPR-like_helical_dom_sf Gene3D 148 264
IPR011990 TPR-like_helical_dom_sf Gene3D 265 356
IPR011990 TPR-like_helical_dom_sf Gene3D 559 672

No CAZYmes available for this sequence

No external refs found!