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  5. Sevir.9G198400.1

Sevir.9G198400.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016342 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016342_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G198400.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G198400.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_174


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 363 494
IPR011990 TPR-like_helical_dom_sf Gene3D 226 360
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 208
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR002885 Pentatricopeptide_rpt Pfam 345 377
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 384 418
IPR002885 Pentatricopeptide_rpt Pfam 174 217
IPR002885 Pentatricopeptide_rpt Pfam 383 432
IPR002885 Pentatricopeptide_rpt Pfam 278 325
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR002885 Pentatricopeptide_rpt TIGRFAM 386 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 177 209
IPR002885 Pentatricopeptide_rpt TIGRFAM 353 385
IPR002885 Pentatricopeptide_rpt TIGRFAM 316 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 421 454

No CAZYmes available for this sequence

No external refs found!