Sevir.9G214000.2

Description : pleiotropic regulatory locus 1

Gene families : OG_01_0005632 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005632_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G214000.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G214000.2
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_123
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_50

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	152	453
IPR045241	Prp46/PLRG1-like	PANTHER	11	476
IPR001680	WD40_rpt	Pfam	201	236
IPR001680	WD40_rpt	Pfam	157	194
IPR001680	WD40_rpt	Pfam	425	453
IPR001680	WD40_rpt	Pfam	241	278
IPR001680	WD40_rpt	Pfam	285	320
IPR019775	WD40_repeat_CS	ProSitePatterns	265	279
IPR001680	WD40_rpt	ProSiteProfiles	288	329
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	143	476
IPR019775	WD40_repeat_CS	ProSitePatterns	307	321
IPR020472	G-protein_beta_WD-40_rep	PRINTS	181	195
IPR020472	G-protein_beta_WD-40_rep	PRINTS	265	279
IPR020472	G-protein_beta_WD-40_rep	PRINTS	307	321
IPR001680	WD40_rpt	ProSiteProfiles	162	203
IPR001680	WD40_rpt	ProSiteProfiles	246	287
IPR001680	WD40_rpt	SMART	155	194
IPR001680	WD40_rpt	SMART	239	278
IPR001680	WD40_rpt	SMART	415	453
IPR001680	WD40_rpt	SMART	281	320
IPR001680	WD40_rpt	SMART	197	236
IPR001680	WD40_rpt	SMART	323	361
IPR001680	WD40_rpt	SMART	364	403
IPR001680	WD40_rpt	ProSiteProfiles	204	245

No CAZYmes available for this sequence

External Links

No external refs found!