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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0005187 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005187_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G219600.3 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G219600.3 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_43 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 532 | 566 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 393 | 422 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 710 | 739 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 151 | 178 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 428 | 455 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 286 | 320 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 637 | 671 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 251 | 285 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 426 | 460 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 314 | 385 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 242 | 313 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 386 | 482 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 566 | 615 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 193 | 228 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 321 | 368 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 641 | 685 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 254 | 299 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 497 | 545 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 391 | 425 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 148 | 182 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 356 | 390 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 497 | 531 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 602 | 636 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 483 | 584 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 89 | 241 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 585 | 707 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 641 | 672 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 217 | 246 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 254 | 286 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 604 | 637 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 428 | 456 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 569 | 603 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 323 | 356 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 358 | 391 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 151 | 181 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 288 | 321 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 499 | 532 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 534 | 567 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 215 | 249 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 567 | 601 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 321 | 355 |
No CAZYmes available for this sequence
| No external refs found! |