Sevir.1G314000.1

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0014508 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014508_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G314000.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G314000.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_144
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR037045	S8pro/Inhibitor_I9_sf	Gene3D	176	268
IPR037045	S8pro/Inhibitor_I9_sf	Gene3D	60	159
IPR000504	RRM_dom	ProSiteProfiles	296	374
IPR000504	RRM_dom	Pfam	298	364
IPR035979	RBD_domain_sf	SUPERFAMILY	291	391
IPR000504	RRM_dom	SMART	297	370
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	269	395
IPR039206	MORF/ORRM1/DAG-like	PANTHER	41	386

No CAZYmes available for this sequence

External Links

No external refs found!