1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.9G293300.1

Sevir.9G293300.1


Description : Glycosyl hydrolase family 38 protein


Gene families : OG_01_0000133 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000133_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G293300.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G293300.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_136
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_114


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004559 alpha-mannosidase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006013 mannose metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000602 Glyco_hydro_38_N Pfam 46 358
IPR015341 Glyco_hydro_38_cen Pfam 363 455
IPR013780 Glyco_hydro_b Gene3D 471 582
IPR037094 Glyco_hydro_38_cen_sf Gene3D 327 405
IPR041147 GH38_C Pfam 905 1010
IPR011682 Glyco_hydro_38_C Pfam 610 823
IPR027291 Glyco_hydro_38_N_sf Gene3D 45 326
IPR011330 Glyco_hydro/deAcase_b/a-brl SUPERFAMILY 38 359
IPR028995 Glyco_hydro_57/38_cen_sf SUPERFAMILY 362 457
IPR037094 Glyco_hydro_38_cen_sf Gene3D 406 461
IPR015341 Glyco_hydro_38_cen SMART 363 437
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 463 1013
HMM Family HMM Length Query Length e-Value Query Start Query End
GH38 269 1014 4.1e-77 46 358
No external refs found!