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  5. Sevir.9G344300.1

Sevir.9G344300.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011311 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011311_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G344300.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G344300.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_38


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 617 651
IPR002885 Pentatricopeptide_rpt Pfam 215 245
IPR002885 Pentatricopeptide_rpt Pfam 83 109
IPR002885 Pentatricopeptide_rpt Pfam 591 616
IPR002885 Pentatricopeptide_rpt Pfam 389 414
IPR002885 Pentatricopeptide_rpt Pfam 187 213
IPR002885 Pentatricopeptide_rpt Pfam 490 512
IPR002885 Pentatricopeptide_rpt Pfam 317 346
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 81 111
IPR011990 TPR-like_helical_dom_sf Gene3D 224 366
IPR011990 TPR-like_helical_dom_sf Gene3D 588 816
IPR002885 Pentatricopeptide_rpt Pfam 617 665
IPR002885 Pentatricopeptide_rpt Pfam 518 564
IPR002885 Pentatricopeptide_rpt Pfam 111 158
IPR002885 Pentatricopeptide_rpt Pfam 415 462
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 596 771
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR011990 TPR-like_helical_dom_sf Gene3D 12 79
IPR011990 TPR-like_helical_dom_sf Gene3D 367 465
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 516 550
IPR011990 TPR-like_helical_dom_sf Gene3D 80 171
IPR011990 TPR-like_helical_dom_sf Gene3D 466 584
IPR002885 Pentatricopeptide_rpt TIGRFAM 114 147
IPR002885 Pentatricopeptide_rpt TIGRFAM 417 450
IPR002885 Pentatricopeptide_rpt TIGRFAM 215 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 619 652
IPR002885 Pentatricopeptide_rpt TIGRFAM 317 347
IPR002885 Pentatricopeptide_rpt TIGRFAM 83 108
IPR002885 Pentatricopeptide_rpt TIGRFAM 518 551
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 415 449
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 112 146

No CAZYmes available for this sequence

No external refs found!