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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0017781 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017781_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G345232.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G345232.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_163 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_65 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 506 | 680 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 402 | 505 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 443 | 477 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 343 | 379 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 443 | 490 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 302 | 401 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 242 | 276 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 478 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 345 | 379 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 244 | 275 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 481 | 513 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 211 | 241 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 343 | 377 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 214 | 241 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 145 | 167 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 518 | 542 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 314 | 340 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 244 | 274 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 147 | 301 |
| IPR032867 | DYW_dom | Pfam | 616 | 740 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 478 | 513 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 312 | 342 |
No CAZYmes available for this sequence
| No external refs found! |