Sevir.9G347600.1

Description : expansin A7

Gene families : OG_01_0063893 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0063893_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G347600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G347600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_583
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_242

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007117	Expansin_CBD	ProSiteProfiles	173	254
IPR007118	Expan_Lol_pI	PRINTS	49	67
IPR007118	Expan_Lol_pI	PRINTS	240	254
IPR007118	Expan_Lol_pI	PRINTS	71	89
IPR007118	Expan_Lol_pI	PRINTS	31	46
IPR007118	Expan_Lol_pI	PRINTS	201	215
IPR007118	Expan_Lol_pI	PRINTS	146	162
IPR036749	Expansin_CBD_sf	Gene3D	164	259
IPR036908	RlpA-like_sf	Gene3D	16	158
IPR002963	Expansin	PRINTS	210	231
IPR002963	Expansin	PRINTS	121	138
IPR002963	Expansin	PRINTS	102	112
IPR002963	Expansin	PRINTS	88	99
IPR002963	Expansin	PRINTS	174	195
IPR002963	Expansin	PRINTS	162	174
IPR002963	Expansin	PRINTS	62	76
IPR002963	Expansin	PRINTS	138	151
IPR036908	RlpA-like_sf	SUPERFAMILY	12	181
IPR002963	Expansin	PANTHER	8	259
IPR036749	Expansin_CBD_sf	SUPERFAMILY	160	253
IPR007112	Expansin/allergen_DPBB_dom	SMART	67	153
IPR007117	Expansin_CBD	Pfam	165	243
IPR009009	RlpA-like_DPBB	Pfam	67	153
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	50	163

No CAZYmes available for this sequence

External Links

No external refs found!