Sevir.9G361600.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0007629 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007629_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G361600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G361600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_164

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	287	410
IPR011990	TPR-like_helical_dom_sf	Gene3D	4	171
IPR011990	TPR-like_helical_dom_sf	Gene3D	411	547
IPR011990	TPR-like_helical_dom_sf	Gene3D	172	286
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	503	537
IPR011990	TPR-like_helical_dom_sf	Gene3D	548	679
IPR002885	Pentatricopeptide_rpt	Pfam	71	100
IPR002885	Pentatricopeptide_rpt	Pfam	404	434
IPR002885	Pentatricopeptide_rpt	Pfam	477	497
IPR002885	Pentatricopeptide_rpt	Pfam	242	266
IPR002885	Pentatricopeptide_rpt	Pfam	133	158
IPR002885	Pentatricopeptide_rpt	Pfam	102	128
IPR002885	Pentatricopeptide_rpt	Pfam	214	233
IPR002885	Pentatricopeptide_rpt	Pfam	375	400
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	402	436
IPR002885	Pentatricopeptide_rpt	TIGRFAM	71	99
IPR002885	Pentatricopeptide_rpt	TIGRFAM	404	433
IPR002885	Pentatricopeptide_rpt	TIGRFAM	273	305
IPR002885	Pentatricopeptide_rpt	TIGRFAM	505	539
IPR002885	Pentatricopeptide_rpt	TIGRFAM	133	158
IPR002885	Pentatricopeptide_rpt	TIGRFAM	541	574
IPR002885	Pentatricopeptide_rpt	TIGRFAM	102	128
IPR002885	Pentatricopeptide_rpt	Pfam	269	316
IPR002885	Pentatricopeptide_rpt	Pfam	502	551
IPR045215	PPR_prot_At1g15510	PANTHER	7	683
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	270	304
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	69	103
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	538	568
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	131	161

No CAZYmes available for this sequence

External Links

No external refs found!