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  5. Sevir.9G428800.1

Sevir.9G428800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010049 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010049_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G428800.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G428800.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_36


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 104 200
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 47 81
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 235 269
IPR002885 Pentatricopeptide_rpt Pfam 172 205
IPR002885 Pentatricopeptide_rpt Pfam 397 444
IPR032867 DYW_dom Pfam 571 696
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR011990 TPR-like_helical_dom_sf Gene3D 451 588
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 173 207
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 111 145
IPR011990 TPR-like_helical_dom_sf Gene3D 347 450
IPR011990 TPR-like_helical_dom_sf Gene3D 11 103
IPR011990 TPR-like_helical_dom_sf Gene3D 267 346
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 398 432
IPR002885 Pentatricopeptide_rpt TIGRFAM 144 175
IPR002885 Pentatricopeptide_rpt TIGRFAM 113 142
IPR002885 Pentatricopeptide_rpt TIGRFAM 237 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 400 433
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 332
IPR002885 Pentatricopeptide_rpt TIGRFAM 269 297
IPR002885 Pentatricopeptide_rpt TIGRFAM 175 206
IPR002885 Pentatricopeptide_rpt TIGRFAM 50 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 206 235
IPR002885 Pentatricopeptide_rpt Pfam 109 138
IPR011990 TPR-like_helical_dom_sf Gene3D 201 266
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 109 557
IPR002885 Pentatricopeptide_rpt Pfam 237 264
IPR002885 Pentatricopeptide_rpt Pfam 206 235
IPR002885 Pentatricopeptide_rpt Pfam 300 329
IPR002885 Pentatricopeptide_rpt Pfam 472 496
IPR002885 Pentatricopeptide_rpt Pfam 50 78
IPR002885 Pentatricopeptide_rpt Pfam 270 296

No CAZYmes available for this sequence

No external refs found!