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  5. Sevir.9G440200.1

Sevir.9G440200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0009372 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009372_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G440200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G440200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_23
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_3


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 411 445
IPR002885 Pentatricopeptide_rpt Pfam 613 659
IPR002885 Pentatricopeptide_rpt Pfam 210 256
IPR002885 Pentatricopeptide_rpt Pfam 310 356
IPR002885 Pentatricopeptide_rpt Pfam 511 557
IPR032867 DYW_dom Pfam 786 909
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 481 511
IPR011990 TPR-like_helical_dom_sf Gene3D 579 678
IPR002885 Pentatricopeptide_rpt Pfam 587 611
IPR002885 Pentatricopeptide_rpt Pfam 82 104
IPR002885 Pentatricopeptide_rpt Pfam 386 410
IPR002885 Pentatricopeptide_rpt Pfam 413 443
IPR002885 Pentatricopeptide_rpt Pfam 484 508
IPR002885 Pentatricopeptide_rpt Pfam 688 711
IPR002885 Pentatricopeptide_rpt Pfam 110 138
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 512 546
IPR002885 Pentatricopeptide_rpt TIGRFAM 615 648
IPR002885 Pentatricopeptide_rpt TIGRFAM 514 545
IPR002885 Pentatricopeptide_rpt TIGRFAM 312 345
IPR002885 Pentatricopeptide_rpt TIGRFAM 110 143
IPR002885 Pentatricopeptide_rpt TIGRFAM 484 508
IPR002885 Pentatricopeptide_rpt TIGRFAM 211 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 413 443
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 108 142
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 412 769
IPR011990 TPR-like_helical_dom_sf Gene3D 265 360
IPR011990 TPR-like_helical_dom_sf Gene3D 361 462
IPR011990 TPR-like_helical_dom_sf Gene3D 165 264
IPR011990 TPR-like_helical_dom_sf Gene3D 10 164
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 310 344
IPR011990 TPR-like_helical_dom_sf Gene3D 463 578
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 613 647
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 209 243

No CAZYmes available for this sequence

No external refs found!