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  5. Sevir.9G449900.1

Sevir.9G449900.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017318 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017318_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G449900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G449900.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_36


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 421 465
IPR011990 TPR-like_helical_dom_sf Gene3D 368 590
IPR011990 TPR-like_helical_dom_sf Gene3D 6 129
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 181 211
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 255 285
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 418 452
IPR002885 Pentatricopeptide_rpt TIGRFAM 258 286
IPR002885 Pentatricopeptide_rpt TIGRFAM 421 454
IPR002885 Pentatricopeptide_rpt TIGRFAM 288 319
IPR002885 Pentatricopeptide_rpt TIGRFAM 183 208
IPR002885 Pentatricopeptide_rpt TIGRFAM 493 516
IPR002885 Pentatricopeptide_rpt TIGRFAM 456 482
IPR002885 Pentatricopeptide_rpt TIGRFAM 155 183
IPR002885 Pentatricopeptide_rpt TIGRFAM 320 352
IPR002885 Pentatricopeptide_rpt Pfam 155 181
IPR002885 Pentatricopeptide_rpt Pfam 258 285
IPR002885 Pentatricopeptide_rpt Pfam 288 312
IPR002885 Pentatricopeptide_rpt Pfam 391 412
IPR002885 Pentatricopeptide_rpt Pfam 493 516
IPR002885 Pentatricopeptide_rpt Pfam 559 584
IPR002885 Pentatricopeptide_rpt Pfam 320 348
IPR002885 Pentatricopeptide_rpt Pfam 183 209
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 286 320
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 433 576
IPR011990 TPR-like_helical_dom_sf Gene3D 237 367
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 453 488
IPR011990 TPR-like_helical_dom_sf Gene3D 137 236
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 13 47

No CAZYmes available for this sequence

No external refs found!