Sevir.9G457500.1

Description : laccase 17

Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G457500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G457500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_112
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_148

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009808	lignin metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0046271	phenylpropanoid catabolic process	None	Extended
BP	GO:0046274	lignin catabolic process	ISM	GOs from InterProScan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	ISM	GOs from InterProScan
MF	GO:0052716	hydroquinone:oxygen oxidoreductase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017761	Laccase	TIGRFAM	26	570
IPR008972	Cupredoxin	Gene3D	17	145
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	533	544
IPR011707	Cu-oxidase-like_N	Pfam	33	146
IPR008972	Cupredoxin	Gene3D	158	349
IPR033138	Cu_oxidase_CS	ProSitePatterns	528	548
IPR011706	Cu-oxidase_C	Pfam	431	552
IPR008972	Cupredoxin	SUPERFAMILY	154	347
IPR034285	CuRO_2_LCC	CDD	161	312
IPR045087	Cu-oxidase_fam	PANTHER	15	570
IPR008972	Cupredoxin	SUPERFAMILY	357	570
IPR008972	Cupredoxin	Gene3D	377	570
IPR034289	CuRO_3_LCC	CDD	416	553
IPR008972	Cupredoxin	SUPERFAMILY	17	179
IPR001117	Cu-oxidase_2nd	Pfam	160	313
IPR034288	CuRO_1_LCC	CDD	29	145

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	571	4.6e-122	40	545

External Links

No external refs found!

Sevir.9G457500.1

Expression Profile

Co-expression Networks

Functional Annotation