1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.9G493600.1

Sevir.9G493600.1


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0007825 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007825_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G493600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G493600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_13
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_27


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 42 126
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 45 79
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 251 285
IPR011990 TPR-like_helical_dom_sf Gene3D 314 382
IPR011990 TPR-like_helical_dom_sf Gene3D 245 313
IPR011990 TPR-like_helical_dom_sf Gene3D 383 451
IPR002885 Pentatricopeptide_rpt Pfam 48 71
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 216 250
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 388 422
IPR002885 Pentatricopeptide_rpt Pfam 321 368
IPR002885 Pentatricopeptide_rpt Pfam 250 299
IPR002885 Pentatricopeptide_rpt Pfam 388 436
IPR002885 Pentatricopeptide_rpt Pfam 180 229
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 181 215
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 146 180
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 321 355
IPR002885 Pentatricopeptide_rpt TIGRFAM 48 71
IPR002885 Pentatricopeptide_rpt TIGRFAM 323 356
IPR002885 Pentatricopeptide_rpt TIGRFAM 253 285
IPR002885 Pentatricopeptide_rpt TIGRFAM 184 217
IPR002885 Pentatricopeptide_rpt TIGRFAM 390 423
IPR002885 Pentatricopeptide_rpt TIGRFAM 149 181
IPR002885 Pentatricopeptide_rpt TIGRFAM 218 252
IPR002885 Pentatricopeptide_rpt Pfam 142 173
IPR011990 TPR-like_helical_dom_sf Gene3D 127 244

No CAZYmes available for this sequence

No external refs found!