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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0015670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015670_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G493900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G493900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_106 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 403 | 476 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 96 | 241 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 264 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 160 | 205 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 408 | 442 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 249 | 402 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 431 | 478 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 300 | 334 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 299 |
| IPR002625 | Smr_dom | SMART | 587 | 678 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 160 | 194 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 443 | 477 |
| IPR002625 | Smr_dom | ProSiteProfiles | 590 | 675 |
| IPR033443 | PPR_long | Pfam | 244 | 385 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 370 | 400 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 198 | 230 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 163 | 195 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 478 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 233 | 265 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 411 | 444 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 338 | 365 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 267 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 399 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 195 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 548 | 575 |
No CAZYmes available for this sequence
| No external refs found! |