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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0011822 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011822_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G498500.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G498500.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_88 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 296 | 328 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 366 | 398 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 537 | 569 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 334 | 364 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 260 | 291 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 471 | 505 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 469 | 503 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 460 | 515 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 306 | 430 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 142 | 304 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 431 | 530 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 531 | 581 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 434 | 468 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 328 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 363 | 397 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 151 | 185 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 258 | 292 |
| IPR033443 | PPR_long | Pfam | 149 | 344 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 293 | 327 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 534 | 568 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 533 | 578 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 362 | 411 |
No CAZYmes available for this sequence
| No external refs found! |