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  5. Sevir.9G520232.1

Sevir.9G520232.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016619 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016619_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G520232.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G520232.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_148


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 706 740
IPR045215 PPR_prot_At1g15510 PANTHER 336 433
IPR045215 PPR_prot_At1g15510 PANTHER 788 982
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 204 238
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 305 339
IPR011990 TPR-like_helical_dom_sf Gene3D 356 460
IPR011990 TPR-like_helical_dom_sf Gene3D 461 564
IPR011990 TPR-like_helical_dom_sf Gene3D 777 980
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 406 440
IPR045215 PPR_prot_At1g15510 PANTHER 430 594
IPR045215 PPR_prot_At1g15510 PANTHER 596 656
IPR045215 PPR_prot_At1g15510 PANTHER 658 787
IPR045215 PPR_prot_At1g15510 PANTHER 56 335
IPR011990 TPR-like_helical_dom_sf Gene3D 155 255
IPR011990 TPR-like_helical_dom_sf Gene3D 659 774
IPR011990 TPR-like_helical_dom_sf Gene3D 565 658
IPR011990 TPR-like_helical_dom_sf Gene3D 256 355
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 608 642
IPR002885 Pentatricopeptide_rpt TIGRFAM 809 842
IPR002885 Pentatricopeptide_rpt TIGRFAM 610 643
IPR002885 Pentatricopeptide_rpt TIGRFAM 509 540
IPR002885 Pentatricopeptide_rpt TIGRFAM 206 239
IPR002885 Pentatricopeptide_rpt TIGRFAM 409 442
IPR002885 Pentatricopeptide_rpt TIGRFAM 307 340
IPR002885 Pentatricopeptide_rpt Pfam 608 647
IPR002885 Pentatricopeptide_rpt Pfam 406 452
IPR002885 Pentatricopeptide_rpt Pfam 806 854
IPR002885 Pentatricopeptide_rpt Pfam 304 350
IPR002885 Pentatricopeptide_rpt Pfam 509 536
IPR002885 Pentatricopeptide_rpt Pfam 947 976
IPR002885 Pentatricopeptide_rpt Pfam 781 805
IPR002885 Pentatricopeptide_rpt Pfam 882 907
IPR002885 Pentatricopeptide_rpt Pfam 708 734
IPR002885 Pentatricopeptide_rpt Pfam 206 235
IPR002885 Pentatricopeptide_rpt Pfam 380 400
IPR002885 Pentatricopeptide_rpt Pfam 178 204
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 807 841

No CAZYmes available for this sequence

No external refs found!