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  5. Sevir.1G343000.1

Sevir.1G343000.1


Description : cyclic nucleotide-binding transporter 1


Gene families : OG_01_0004416 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004416_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G343000.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G343000.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014710 RmlC-like_jellyroll Gene3D 574 698
IPR000595 cNMP-bd_dom CDD 576 701
IPR005821 Ion_trans_dom Pfam 182 504
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 504 701
IPR000595 cNMP-bd_dom ProSiteProfiles 576 657
IPR000595 cNMP-bd_dom SMART 576 711

No CAZYmes available for this sequence

No external refs found!