Sevir.9G540000.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G540000.1	No neighbors in network
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G540000.1
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_3

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007118	Expan_Lol_pI	PRINTS	138	154
IPR007118	Expan_Lol_pI	PRINTS	22	37
IPR007118	Expan_Lol_pI	PRINTS	40	58
IPR007118	Expan_Lol_pI	PRINTS	192	206
IPR007118	Expan_Lol_pI	PRINTS	230	244
IPR007118	Expan_Lol_pI	PRINTS	62	80
IPR002963	Expansin	PRINTS	201	222
IPR002963	Expansin	PRINTS	53	67
IPR002963	Expansin	PRINTS	230	246
IPR002963	Expansin	PRINTS	94	104
IPR002963	Expansin	PRINTS	166	187
IPR002963	Expansin	PRINTS	81	92
IPR002963	Expansin	PRINTS	113	130
IPR002963	Expansin	PRINTS	154	166
IPR002963	Expansin	PRINTS	130	143
IPR002963	Expansin	PANTHER	6	249
IPR007112	Expansin/allergen_DPBB_dom	SMART	58	145
IPR036908	RlpA-like_sf	SUPERFAMILY	22	171
IPR007117	Expansin_CBD	Pfam	156	233
IPR007117	Expansin_CBD	ProSiteProfiles	165	244
IPR036908	RlpA-like_sf	Gene3D	11	150
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	41	155
IPR009009	RlpA-like_DPBB	Pfam	58	145
IPR036749	Expansin_CBD_sf	SUPERFAMILY	152	243
IPR036749	Expansin_CBD_sf	Gene3D	155	249

No CAZYmes available for this sequence

External Links

No external refs found!