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  5. Sevir.9G546200.1

Sevir.9G546200.1


Description : zinc finger WD40 repeat protein 1


Gene families : OG_01_0007801 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007801_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G546200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G546200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_75
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_15


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 104 239
IPR000571 Znf_CCCH ProSiteProfiles 27 53
IPR001680 WD40_rpt ProSiteProfiles 117 158
IPR020472 G-protein_beta_WD-40_rep PRINTS 261 275
IPR020472 G-protein_beta_WD-40_rep PRINTS 136 150
IPR020472 G-protein_beta_WD-40_rep PRINTS 301 315
IPR045182 JINGUBANG-like PANTHER 60 381
IPR001680 WD40_rpt ProSiteProfiles 244 283
IPR001680 WD40_rpt SMART 110 149
IPR001680 WD40_rpt SMART 323 364
IPR001680 WD40_rpt SMART 277 314
IPR001680 WD40_rpt SMART 237 274
IPR001680 WD40_rpt SMART 192 230
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 115 407
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 240 414
IPR001680 WD40_rpt Pfam 115 149
IPR001680 WD40_rpt Pfam 279 313

No CAZYmes available for this sequence

No external refs found!