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  5. Sevir.9G549100.1

Sevir.9G549100.1


Description : beta-amylase 1


Gene families : OG_01_0002030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002030_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G549100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G549100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_97
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_37


Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process ISM GOs from InterProScan
MF GO:0016161 beta-amylase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001554 Glyco_hydro_14 PRINTS 453 475
IPR001554 Glyco_hydro_14 PRINTS 177 198
IPR001554 Glyco_hydro_14 PRINTS 269 291
IPR001554 Glyco_hydro_14 PRINTS 344 363
IPR001554 Glyco_hydro_14 PRINTS 134 148
IPR001554 Glyco_hydro_14 PRINTS 416 439
IPR001554 Glyco_hydro_14 PRINTS 155 173
IPR001554 Glyco_hydro_14 PRINTS 381 397
IPR001554 Glyco_hydro_14 PRINTS 398 409
IPR001371 Glyco_hydro_14B_pln PRINTS 419 429
IPR001371 Glyco_hydro_14B_pln PRINTS 259 268
IPR001371 Glyco_hydro_14B_pln PRINTS 502 516
IPR001554 Glyco_hydro_14 PANTHER 2 562
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 97 528
IPR018238 Glyco_hydro_14_CS ProSitePatterns 181 189
IPR001554 Glyco_hydro_14 Pfam 102 522
IPR018238 Glyco_hydro_14_CS ProSitePatterns 269 279
HMM Family HMM Length Query Length e-Value Query Start Query End
GH14 412 564 4e-198 102 519
No external refs found!