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  5. Sevir.9G573900.1

Sevir.9G573900.1


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0001970 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001970_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G573900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G573900.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 14 210
IPR001680 WD40_rpt Pfam 231 265
IPR019775 WD40_repeat_CS ProSitePatterns 133 147
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 272 368
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 10 271
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 107 600
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 403 661
IPR001680 WD40_rpt SMART 1022 1062
IPR001680 WD40_rpt SMART 557 597
IPR001680 WD40_rpt SMART 1169 1213
IPR001680 WD40_rpt SMART 227 266
IPR001680 WD40_rpt SMART 107 146
IPR001680 WD40_rpt SMART 324 364
IPR001680 WD40_rpt SMART 498 540
IPR001680 WD40_rpt SMART 1236 1276
IPR001680 WD40_rpt SMART 285 322
IPR001680 WD40_rpt SMART 763 812
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1157 1304
IPR001680 WD40_rpt ProSiteProfiles 234 265
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 735 1109
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 761 1276

No CAZYmes available for this sequence

No external refs found!