Sevir.2G005800.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0001850 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001850_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G005800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G005800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_2

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR044650	SRFR1-like	PANTHER	1	1012
IPR011990	TPR-like_helical_dom_sf	Gene3D	370	571
IPR019734	TPR_repeat	ProSiteProfiles	334	367
IPR019734	TPR_repeat	ProSiteProfiles	266	299
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	15	536
IPR019734	TPR_repeat	SMART	402	435
IPR019734	TPR_repeat	SMART	436	469
IPR019734	TPR_repeat	SMART	368	401
IPR019734	TPR_repeat	SMART	35	68
IPR019734	TPR_repeat	SMART	334	367
IPR019734	TPR_repeat	SMART	69	102
IPR019734	TPR_repeat	SMART	266	299
IPR019734	TPR_repeat	SMART	470	503
IPR019734	TPR_repeat	SMART	300	333
IPR019734	TPR_repeat	SMART	504	537
IPR019734	TPR_repeat	ProSiteProfiles	300	333
IPR019734	TPR_repeat	Pfam	437	467
IPR011990	TPR-like_helical_dom_sf	Gene3D	2	123
IPR011990	TPR-like_helical_dom_sf	Gene3D	230	369

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.2G005800.1

Expression Profile

Co-expression Networks

Functional Annotation