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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0016559 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016559_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G005900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G005900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_144 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_44 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 22 | 145 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 297 | 534 |
| IPR032867 | DYW_dom | Pfam | 498 | 622 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 221 | 261 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 323 | 371 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 399 | 424 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 394 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 223 | 257 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 326 | 356 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 163 | 186 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 297 | 317 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 398 | 424 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 192 | 220 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 93 | 123 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 152 | 277 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 324 | 358 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 91 | 125 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 221 | 255 |
No CAZYmes available for this sequence
| No external refs found! |