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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0002855 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002855_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G013400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G013400.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_59 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_45 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 358 | 392 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 322 | 357 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 428 | 462 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 425 | 486 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 353 | 424 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 487 | 561 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 498 | 532 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 498 | 544 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 255 | 299 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 321 | 367 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 429 | 476 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 396 | 422 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 219 | 248 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 216 | 250 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 182 | 352 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 431 | 464 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 289 | 322 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 466 | 498 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 396 | 422 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 361 | 392 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 254 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 502 | 534 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 219 | 251 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 324 | 359 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 251 | 285 |
No CAZYmes available for this sequence
| No external refs found! |