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  5. Sevir.1G045800.1

Sevir.1G045800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014404 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014404_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G045800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G045800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_8


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0008380 RNA splicing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 451 603
IPR011990 TPR-like_helical_dom_sf Gene3D 133 339
IPR002885 Pentatricopeptide_rpt Pfam 237 266
IPR002885 Pentatricopeptide_rpt Pfam 414 441
IPR002885 Pentatricopeptide_rpt Pfam 486 514
IPR011990 TPR-like_helical_dom_sf Gene3D 342 450
IPR044578 BIR6-like PANTHER 20 602
IPR002885 Pentatricopeptide_rpt TIGRFAM 237 269

No CAZYmes available for this sequence

No external refs found!