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  5. Sevir.2G086200.1

Sevir.2G086200.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0004348 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004348_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G086200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G086200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_42


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 366 400
IPR002885 Pentatricopeptide_rpt Pfam 261 291
IPR002885 Pentatricopeptide_rpt Pfam 719 746
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 294 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 333 367
IPR002885 Pentatricopeptide_rpt TIGRFAM 543 575
IPR002885 Pentatricopeptide_rpt TIGRFAM 157 190
IPR002885 Pentatricopeptide_rpt TIGRFAM 192 224
IPR002885 Pentatricopeptide_rpt TIGRFAM 508 542
IPR002885 Pentatricopeptide_rpt TIGRFAM 261 295
IPR002885 Pentatricopeptide_rpt TIGRFAM 296 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 227 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 579 612
IPR002885 Pentatricopeptide_rpt TIGRFAM 403 436
IPR002885 Pentatricopeptide_rpt TIGRFAM 438 472
IPR002885 Pentatricopeptide_rpt TIGRFAM 368 402
IPR002885 Pentatricopeptide_rpt TIGRFAM 614 647
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 436 470
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 331 365
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 154 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 576 610
IPR011990 TPR-like_helical_dom_sf Gene3D 394 465
IPR011990 TPR-like_helical_dom_sf Gene3D 89 254
IPR002885 Pentatricopeptide_rpt Pfam 506 554
IPR002885 Pentatricopeptide_rpt Pfam 579 622
IPR002885 Pentatricopeptide_rpt Pfam 293 339
IPR002885 Pentatricopeptide_rpt Pfam 435 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 259 293
IPR011990 TPR-like_helical_dom_sf Gene3D 559 675
IPR011990 TPR-like_helical_dom_sf Gene3D 271 393
IPR011990 TPR-like_helical_dom_sf Gene3D 676 833
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 258
IPR011990 TPR-like_helical_dom_sf Gene3D 466 558
IPR002885 Pentatricopeptide_rpt Pfam 354 413
IPR002885 Pentatricopeptide_rpt Pfam 178 236
IPR002885 Pentatricopeptide_rpt Pfam 749 794
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 751 785
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 189 223
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 295 603
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 506 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 611 645
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 401 435
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 541 575

No CAZYmes available for this sequence

No external refs found!