GRMZM5G889299_T01

No description available

Gene families : OG_01_0018660 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018660_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): GRMZM5G889299_T01
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: GRMZM5G889299_T01
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_19

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036397	RNaseH_sf	Gene3D	204	417
IPR006172	DNA-dir_DNA_pol_B	SMART	207	729
IPR015833	DNA-dir_DNA_pol_B_mt_lin_plsmd	PIRSF	2	857
IPR023211	DNA_pol_palm_dom_sf	Gene3D	668	786
IPR023211	DNA_pol_palm_dom_sf	Gene3D	431	507
IPR004868	DNA-dir_DNA_pol_B_mt/vir	Pfam	296	393
IPR004868	DNA-dir_DNA_pol_B_mt/vir	Pfam	394	713
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	428	808
IPR012337	RNaseH-like_sf	SUPERFAMILY	209	420
IPR017964	DNA-dir_DNA_pol_B_CS	ProSitePatterns	717	725
IPR015833	DNA-dir_DNA_pol_B_mt_lin_plsmd	PIRSF	2	857
IPR036397	RNaseH_sf	Gene3D	204	417
IPR012337	RNaseH-like_sf	SUPERFAMILY	209	420
IPR017964	DNA-dir_DNA_pol_B_CS	ProSitePatterns	717	725
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	428	808
IPR006172	DNA-dir_DNA_pol_B	SMART	207	729
IPR004868	DNA-dir_DNA_pol_B_mt/vir	Pfam	296	392
IPR004868	DNA-dir_DNA_pol_B_mt/vir	Pfam	394	713
IPR023211	DNA_pol_palm_dom_sf	Gene3D	668	786
IPR023211	DNA_pol_palm_dom_sf	Gene3D	431	507

No CAZYmes available for this sequence

External Links

No external refs found!

GRMZM5G889299_T01

Expression Profile

Co-expression Networks

Functional Annotation