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  5. Zm00001d000110_T003

Zm00001d000110_T003


Description : SWITCH/sucrose nonfermenting 3C


Gene families : OG_01_0002414 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002414_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d000110_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d000110_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_210
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036388 WH-like_DNA-bd_sf Gene3D 192 280
IPR001005 SANT/Myb SMART 418 466
IPR001005 SANT/Myb CDD 421 463
IPR032451 SMARCC_C Pfam 595 668
IPR009057 Homeobox-like_sf SUPERFAMILY 185 278
IPR017930 Myb_dom ProSiteProfiles 421 468
IPR007526 SWIRM ProSiteProfiles 186 285
IPR017884 SANT_dom ProSiteProfiles 417 468
IPR000433 Znf_ZZ ProSiteProfiles 359 413
IPR001005 SANT/Myb Pfam 420 462
IPR001005 SANT/Myb ProSiteProfiles 414 464
IPR009057 Homeobox-like_sf SUPERFAMILY 419 471
IPR007526 SWIRM Pfam 196 276
IPR017930 Myb_dom Pfam 420 462
IPR007526 SWIRM Pfam 189 276
IPR001005 SANT/Myb CDD 421 463
IPR007526 SWIRM ProSiteProfiles 186 285
IPR017884 SANT_dom ProSiteProfiles 417 468
IPR001005 SANT/Myb ProSiteProfiles 414 464
IPR001005 SANT/Myb SMART 418 466
IPR036388 WH-like_DNA-bd_sf Gene3D 192 280
IPR032451 SMARCC_C Pfam 595 668
IPR009057 Homeobox-like_sf SUPERFAMILY 185 278
IPR017930 Myb_dom ProSiteProfiles 421 468
IPR009057 Homeobox-like_sf SUPERFAMILY 419 471

No CAZYmes available for this sequence

No external refs found!