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  5. Zm00001d000216_T001

Zm00001d000216_T001


Description : Pectate lyase family protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d000216_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d000216_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_321
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018082 AmbAllergen PRINTS 137 162
IPR018082 AmbAllergen PRINTS 338 357
IPR018082 AmbAllergen PRINTS 380 404
IPR018082 AmbAllergen PRINTS 316 335
IPR018082 AmbAllergen PRINTS 409 432
IPR018082 AmbAllergen PRINTS 173 189
IPR018082 AmbAllergen PRINTS 236 257
IPR018082 AmbAllergen PRINTS 113 130
IPR007524 Pec_lyase_N Pfam 34 79
IPR045032 PEL PANTHER 22 435
IPR002022 Pec_lyase Pfam 172 355
IPR002022 Pec_lyase SMART 165 361
IPR012334 Pectin_lyas_fold Gene3D 90 431
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 91 429
IPR018082 AmbAllergen PRINTS 137 162
IPR018082 AmbAllergen PRINTS 338 357
IPR018082 AmbAllergen PRINTS 380 404
IPR018082 AmbAllergen PRINTS 316 335
IPR018082 AmbAllergen PRINTS 409 432
IPR018082 AmbAllergen PRINTS 173 189
IPR018082 AmbAllergen PRINTS 236 257
IPR018082 AmbAllergen PRINTS 113 130
IPR002022 Pec_lyase Pfam 171 355
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 91 429
IPR007524 Pec_lyase_N Pfam 37 78
IPR012334 Pectin_lyas_fold Gene3D 90 431
IPR045032 PEL PANTHER 7 438
IPR002022 Pec_lyase SMART 165 361

No CAZYmes available for this sequence

No external refs found!