Zm00001d000417_T001


Description : photosystem II reaction center protein A


Gene families : OG_01_0008235 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008235_tree

Sequence : cds (download), rna (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d000417_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d000417_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_8
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_19


Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity ISM GOs from InterProScan
BP GO:0009772 photosynthetic electron transport in photosystem II ISM GOs from InterProScan
BP GO:0019684 photosynthesis, light reaction ISM GOs from InterProScan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity ISM GOs from InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Source Start Stop
IPR000484 Photo_RC_L/M PANTHER 1 347
IPR036854 Photo_II_D1/D2_sf Gene3D 4 187
IPR000484 Photo_RC_L/M Pfam 28 324
IPR005867 PSII_D1 NCBIfam 1 348
IPR000484 Photo_RC_L/M PRINTS 109 137
IPR000484 Photo_RC_L/M PRINTS 142 164
IPR000484 Photo_RC_L/M PRINTS 197 223
IPR000484 Photo_RC_L/M ProSitePatterns 191 217
IPR036854 Photo_II_D1/D2_sf SUPERFAMILY 11 343
IPR005867 PSII_D1 CDD 7 344
IPR005867 PSII_D1 Hamap 1 347
IPR005867 PSII_D1 CDD 7 344
IPR005867 PSII_D1 Hamap 1 347
IPR036854 Photo_II_D1/D2_sf Gene3D 4 187
IPR036854 Photo_II_D1/D2_sf SUPERFAMILY 11 343
IPR000484 Photo_RC_L/M PANTHER 43 328
IPR000484 Photo_RC_L/M PRINTS 109 137
IPR000484 Photo_RC_L/M PRINTS 142 164
IPR000484 Photo_RC_L/M PRINTS 197 223
IPR000484 Photo_RC_L/M Pfam 28 327
IPR005867 PSII_D1 TIGRFAM 1 348
IPR000484 Photo_RC_L/M ProSitePatterns 191 217

No CAZYmes available for this sequence

No external refs found!