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  5. Zm00001d001845_T001

Zm00001d001845_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015389 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015389_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d001845_T001 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d001845_T001
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 81 115
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt Pfam 472 492
IPR002885 Pentatricopeptide_rpt Pfam 48 72
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 152 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 327 361
IPR011990 TPR-like_helical_dom_sf Gene3D 46 214
IPR011990 TPR-like_helical_dom_sf Gene3D 215 285
IPR011990 TPR-like_helical_dom_sf Gene3D 387 457
IPR011990 TPR-like_helical_dom_sf Gene3D 302 386
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt Pfam 148 180
IPR002885 Pentatricopeptide_rpt Pfam 426 454
IPR002885 Pentatricopeptide_rpt Pfam 327 375
IPR002885 Pentatricopeptide_rpt Pfam 221 269
IPR002885 Pentatricopeptide_rpt Pfam 80 127
IPR002885 Pentatricopeptide_rpt NCBIfam 365 387
IPR002885 Pentatricopeptide_rpt NCBIfam 329 363
IPR002885 Pentatricopeptide_rpt NCBIfam 156 184
IPR002885 Pentatricopeptide_rpt NCBIfam 224 258
IPR002885 Pentatricopeptide_rpt NCBIfam 84 116
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR011990 TPR-like_helical_dom_sf Gene3D 465 532
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 152 186
IPR002885 Pentatricopeptide_rpt Pfam 148 180
IPR002885 Pentatricopeptide_rpt Pfam 426 454
IPR002885 Pentatricopeptide_rpt Pfam 48 72
IPR002885 Pentatricopeptide_rpt Pfam 472 492
IPR011990 TPR-like_helical_dom_sf Gene3D 387 457
IPR011990 TPR-like_helical_dom_sf Gene3D 215 285
IPR011990 TPR-like_helical_dom_sf Gene3D 302 386
IPR011990 TPR-like_helical_dom_sf Gene3D 465 532
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt Pfam 80 126
IPR002885 Pentatricopeptide_rpt Pfam 221 269
IPR002885 Pentatricopeptide_rpt Pfam 327 375
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 327 361
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 81 115
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 365 387
IPR002885 Pentatricopeptide_rpt TIGRFAM 329 363
IPR002885 Pentatricopeptide_rpt TIGRFAM 84 116
IPR002885 Pentatricopeptide_rpt TIGRFAM 156 184
IPR002885 Pentatricopeptide_rpt TIGRFAM 224 258
IPR011990 TPR-like_helical_dom_sf Gene3D 46 214

No CAZYmes available for this sequence

No external refs found!