Zm00001d001983_T003

Description : Eukaryotic release factor 1 (eRF1) family protein

Gene families : OG_01_0007621 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007621_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d001983_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d001983_T003	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_222

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070481	nuclear-transcribed mRNA catabolic process, non-stop decay	ISM	GOs from InterProScan
BP	GO:0070966	nuclear-transcribed mRNA catabolic process, no-go decay	ISM	GOs from InterProScan
BP	GO:0071025	RNA surveillance	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005140	eRF1_1_Pelota	SMART	1	137
IPR005142	eRF1_3	Pfam	279	377
IPR005141	eRF1_2	Pfam	144	275
IPR005140	eRF1_1_Pelota	Pfam	1	136
IPR042226	eFR1_2_sf	Gene3D	143	276
IPR038069	Pelota/DOM34_N	Gene3D	1	139
IPR029064	Ribosomal_eL30-like_sf	Gene3D	277	385
IPR029064	Ribosomal_eL30-like_sf	SUPERFAMILY	272	377
IPR004405	Transl-rel_pelota	PANTHER	1	384
IPR004405	Transl-rel_pelota	NCBIfam	24	377
IPR038069	Pelota/DOM34_N	SUPERFAMILY	1	137
IPR005140	eRF1_1_Pelota	SMART	1	137
IPR029064	Ribosomal_eL30-like_sf	SUPERFAMILY	272	377
IPR004405	Transl-rel_pelota	TIGRFAM	24	377
IPR042226	eFR1_2_sf	Gene3D	143	276
IPR029064	Ribosomal_eL30-like_sf	Gene3D	277	385
IPR005142	eRF1_3	Pfam	279	377
IPR005141	eRF1_2	Pfam	144	275
IPR005140	eRF1_1_Pelota	Pfam	1	136
IPR038069	Pelota/DOM34_N	SUPERFAMILY	1	137
IPR038069	Pelota/DOM34_N	Gene3D	1	139
IPR004405	Transl-rel_pelota	PANTHER	1	385

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d001983_T003

Expression Profile

Co-expression Networks

Functional Annotation