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  5. Zm00001d002141_T006

Zm00001d002141_T006


Description : UBP1-associated protein 2A


Gene families : OG_01_0005257 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005257_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002141_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002141_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_266


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom Pfam 231 299
IPR000504 RRM_dom Pfam 114 172
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 197 321
IPR035979 RBD_domain_sf SUPERFAMILY 196 316
IPR000504 RRM_dom SMART 113 185
IPR000504 RRM_dom SMART 230 302
IPR000504 RRM_dom ProSiteProfiles 229 306
IPR035979 RBD_domain_sf SUPERFAMILY 107 215
IPR000504 RRM_dom ProSiteProfiles 112 189
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 8 196
IPR035979 RBD_domain_sf SUPERFAMILY 196 316
IPR000504 RRM_dom SMART 113 185
IPR000504 RRM_dom SMART 230 302
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 197 321
IPR000504 RRM_dom Pfam 114 172
IPR000504 RRM_dom Pfam 231 299
IPR000504 RRM_dom ProSiteProfiles 112 189
IPR035979 RBD_domain_sf SUPERFAMILY 107 215
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 8 196
IPR000504 RRM_dom ProSiteProfiles 229 306

No CAZYmes available for this sequence

No external refs found!