Zm00001d002390_T024

Description : DNA ligase IV

Gene families : OG_01_0001496 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001496_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002390_T024
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002390_T024
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_263

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	ISM	GOs from InterProScan
MF	GO:0003910	DNA ligase (ATP) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006266	DNA ligation	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051103	DNA ligation involved in DNA repair	ISM	GOs from InterProScan
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071897	DNA biosynthetic process	ISM	GOs from InterProScan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012309	DNA_ligase_ATP-dep_C	Pfam	469	586
IPR036420	BRCT_dom_sf	Gene3D	800	909
IPR012340	NA-bd_OB-fold	Gene3D	448	606
IPR012310	DNA_ligase_ATP-dep_cent	ProSiteProfiles	343	481
IPR012308	DNA_ligase_ATP-dep_N	Pfam	7	188
IPR021536	DNA_ligase_IV_dom	Pfam	748	780
IPR001357	BRCT_dom	Pfam	656	734
IPR044125	Adenylation_DNA_ligase_IV	CDD	216	448
IPR001357	BRCT_dom	ProSiteProfiles	652	740
IPR029710	LIG4	PANTHER	1	910
IPR012340	NA-bd_OB-fold	SUPERFAMILY	453	602
IPR001357	BRCT_dom	ProSiteProfiles	799	909
IPR036599	DNA_ligase_N_sf	Gene3D	1	220
IPR012310	DNA_ligase_ATP-dep_cent	Pfam	228	444
IPR036420	BRCT_dom_sf	SUPERFAMILY	656	741
IPR036420	BRCT_dom_sf	Gene3D	667	783
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	420	444
IPR036599	DNA_ligase_N_sf	SUPERFAMILY	4	185
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	252	260
IPR036420	BRCT_dom_sf	SUPERFAMILY	790	911
IPR000977	DNA_ligase_ATP-dep	NCBIfam	65	599
IPR001357	BRCT_dom	SMART	654	730
IPR036420	BRCT_dom_sf	Gene3D	667	783
IPR036599	DNA_ligase_N_sf	SUPERFAMILY	4	185
IPR036599	DNA_ligase_N_sf	Gene3D	1	220
IPR044125	Adenylation_DNA_ligase_IV	CDD	216	448
IPR012310	DNA_ligase_ATP-dep_cent	ProSiteProfiles	343	481
IPR001357	BRCT_dom	Pfam	654	737
IPR012309	DNA_ligase_ATP-dep_C	Pfam	469	586
IPR029710	LIG4	PANTHER	2	910
IPR000977	DNA_ligase_ATP-dep	TIGRFAM	65	599
IPR001357	BRCT_dom	ProSiteProfiles	652	740
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	420	444
IPR012340	NA-bd_OB-fold	SUPERFAMILY	453	602
IPR001357	BRCT_dom	SMART	654	730
IPR036420	BRCT_dom_sf	Gene3D	800	909
IPR012310	DNA_ligase_ATP-dep_cent	Pfam	228	444
IPR001357	BRCT_dom	ProSiteProfiles	799	909
IPR012308	DNA_ligase_ATP-dep_N	Pfam	7	188
IPR016059	DNA_ligase_ATP-dep_CS	ProSitePatterns	252	260
IPR036420	BRCT_dom_sf	SUPERFAMILY	656	741
IPR036420	BRCT_dom_sf	SUPERFAMILY	790	911

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d002390_T024

Expression Profile

Co-expression Networks

Functional Annotation