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  5. Zm00001d002420_T001

Zm00001d002420_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0005658 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005658_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002420_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002420_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_274


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom SMART 25 98
IPR000504 RRM_dom Pfam 36 85
IPR037151 AlkB-like_sf Gene3D 124 332
IPR027450 AlkB-like Pfam 168 327
IPR005123 Oxoglu/Fe-dep_dioxygenase ProSiteProfiles 206 330
IPR032857 ALKBH4 PANTHER 23 346
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 14 109
IPR000504 RRM_dom ProSiteProfiles 24 102
IPR035979 RBD_domain_sf SUPERFAMILY 6 110
IPR005123 Oxoglu/Fe-dep_dioxygenase ProSiteProfiles 206 330
IPR000504 RRM_dom SMART 25 98
IPR037151 AlkB-like_sf Gene3D 124 332
IPR027450 AlkB-like Pfam 163 327
IPR000504 RRM_dom ProSiteProfiles 24 102
IPR035979 RBD_domain_sf SUPERFAMILY 6 110
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 14 109

No CAZYmes available for this sequence

No external refs found!