Zm00001d002510_T001

Description : DNA replication helicase, putative

Gene families : OG_01_0016170 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016170_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002510_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002510_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_179

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	DNA endonuclease activity	None	Extended
MF	GO:0004536	DNA nuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017108	5'-flap endonuclease activity	ISM	GOs from InterProScan
MF	GO:0017116	single-stranded DNA helicase activity	ISM	GOs from InterProScan
BP	GO:0033567	DNA replication, Okazaki fragment processing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048256	flap endonuclease activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR047187	SF1_C_Upf1	CDD	1072	1305
IPR027417	P-loop_NTPase	Gene3D	797	1069
IPR026851	Dna2/JHS1_DEXXQ-box	CDD	871	1071
IPR029017	Enolase-like_N	Gene3D	1388	1489
IPR027417	P-loop_NTPase	Gene3D	1070	1316
IPR029017	Enolase-like_N	SUPERFAMILY	1394	1446
IPR041677	DNA2/NAM7_AAA_11	Pfam	972	1039
IPR041677	DNA2/NAM7_AAA_11	Pfam	871	963
IPR014808	DNA_replication_fac_Dna2_N	Pfam	313	512
IPR045055	DNA2/NAM7-like	PANTHER	351	1309
IPR027417	P-loop_NTPase	SUPERFAMILY	869	1296
IPR011604	PDDEXK-like_dom_sf	Gene3D	364	631
IPR041679	DNA2/NAM7-like_C	Pfam	1239	1291
IPR041679	DNA2/NAM7-like_C	Pfam	1048	1198
IPR027417	P-loop_NTPase	SUPERFAMILY	869	1296
IPR027417	P-loop_NTPase	Gene3D	1070	1316
IPR029017	Enolase-like_N	SUPERFAMILY	1394	1446
IPR041677	DNA2/NAM7_AAA_11	Pfam	871	965
IPR041677	DNA2/NAM7_AAA_11	Pfam	972	1039
IPR011604	PDDEXK-like_dom_sf	Gene3D	364	631
IPR045055	DNA2/NAM7-like	PANTHER	135	1309
IPR041679	DNA2/NAM7-like_C	CDD	1072	1305
IPR026851	Dna2/JHS1_DEXXQ-box	PANTHER	135	1309
IPR041679	DNA2/NAM7-like_C	Pfam	1049	1290
IPR014808	DNA_replication_fac_Dna2_N	Pfam	313	512
IPR029017	Enolase-like_N	Gene3D	1388	1489
IPR027417	P-loop_NTPase	Gene3D	797	1069

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d002510_T001

Expression Profile

Co-expression Networks

Functional Annotation