Zm00001d002617_T028

Description : binding

Gene families : OG_01_0002502 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002502_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002617_T028	No neighbors in network
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002617_T028
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016570	histone modification	ISM	GOs from InterProScan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR031101	Ctr9	PANTHER	2	1055
IPR019734	TPR_repeat	Pfam	316	342
IPR019734	TPR_repeat	Pfam	459	485
IPR019734	TPR_repeat	Pfam	392	419
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	522	797
IPR019734	TPR_repeat	ProSiteProfiles	386	419
IPR019734	TPR_repeat	ProSiteProfiles	720	753
IPR019734	TPR_repeat	ProSiteProfiles	207	240
IPR019734	TPR_repeat	SMART	207	240
IPR019734	TPR_repeat	SMART	720	753
IPR019734	TPR_repeat	SMART	681	714
IPR019734	TPR_repeat	SMART	458	487
IPR019734	TPR_repeat	SMART	564	597
IPR019734	TPR_repeat	SMART	352	385
IPR019734	TPR_repeat	SMART	315	348
IPR019734	TPR_repeat	SMART	756	789
IPR019734	TPR_repeat	SMART	127	160
IPR019734	TPR_repeat	SMART	161	198
IPR019734	TPR_repeat	SMART	386	419
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	212	442
IPR011990	TPR-like_helical_dom_sf	Gene3D	9	346
IPR011990	TPR-like_helical_dom_sf	Gene3D	347	488
IPR013105	TPR_2	Pfam	213	240
IPR011990	TPR-like_helical_dom_sf	Gene3D	522	831
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	105	249
IPR019734	TPR_repeat	ProSiteProfiles	352	385
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	105	249
IPR013105	TPR_2	Pfam	212	240
IPR011990	TPR-like_helical_dom_sf	Gene3D	522	831
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	212	442
IPR019734	TPR_repeat	Pfam	723	747
IPR019734	TPR_repeat	ProSiteProfiles	352	385
IPR019734	TPR_repeat	SMART	207	240
IPR019734	TPR_repeat	SMART	720	753
IPR019734	TPR_repeat	SMART	681	714
IPR019734	TPR_repeat	SMART	458	487
IPR019734	TPR_repeat	SMART	564	597
IPR019734	TPR_repeat	SMART	352	385
IPR019734	TPR_repeat	SMART	315	348
IPR019734	TPR_repeat	SMART	756	789
IPR019734	TPR_repeat	SMART	127	160
IPR019734	TPR_repeat	SMART	161	198
IPR019734	TPR_repeat	SMART	386	419
IPR011990	TPR-like_helical_dom_sf	Gene3D	9	346
IPR011990	TPR-like_helical_dom_sf	Gene3D	347	488
IPR019734	TPR_repeat	ProSiteProfiles	386	419
IPR031101	Ctr9	PANTHER	1	1048
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	522	797
IPR019734	TPR_repeat	ProSiteProfiles	207	240
IPR019734	TPR_repeat	ProSiteProfiles	720	753
IPR019734	TPR_repeat	Pfam	316	342
IPR019734	TPR_repeat	Pfam	459	485
IPR019734	TPR_repeat	Pfam	392	419

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d002617_T028

Expression Profile

Co-expression Networks

Functional Annotation