Zm00001d002716_T002

Description : pre-mRNA processing ribonucleoprotein binding region-containing protein

Gene families : OG_01_0001242 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001242_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002716_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002716_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_228
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_249

Type	GO Term	Name	Evidence	Source
BP	GO:0000244	spliceosomal tri-snRNP complex assembly	ISM	GOs from InterProScan
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000387	spliceosomal snRNP assembly	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	ISM	GOs from InterProScan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0097526	spliceosomal tri-snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR042239	Nop_C	Gene3D	217	339
IPR019175	Prp31_C	Pfam	339	456
IPR036070	Nop_dom_sf	SUPERFAMILY	89	334
IPR002687	Nop_dom	Pfam	103	331
IPR027105	Prp31	PANTHER	1	481
IPR002687	Nop_dom	ProSiteProfiles	216	334
IPR012976	NOSIC	SMART	95	147
IPR012976	NOSIC	SMART	95	147
IPR019175	Prp31_C	Pfam	339	456
IPR036070	Nop_dom_sf	SUPERFAMILY	89	334
IPR042239	Nop_C	Gene3D	217	339
IPR002687	Nop_dom	ProSiteProfiles	216	334
IPR002687	Nop_dom	Pfam	103	331
IPR027105	Prp31	PANTHER	1	481

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d002716_T002

Expression Profile

Co-expression Networks

Functional Annotation