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  5. Zm00001d002771_T001

Zm00001d002771_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015275 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015275_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d002771_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d002771_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_236


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 267 338
IPR011990 TPR-like_helical_dom_sf Gene3D 44 145
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 238 272
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt NCBIfam 275 309
IPR002885 Pentatricopeptide_rpt NCBIfam 241 274
IPR002885 Pentatricopeptide_rpt NCBIfam 170 204
IPR002885 Pentatricopeptide_rpt NCBIfam 205 238
IPR002885 Pentatricopeptide_rpt NCBIfam 347 378
IPR002885 Pentatricopeptide_rpt NCBIfam 412 445
IPR002885 Pentatricopeptide_rpt NCBIfam 448 474
IPR011990 TPR-like_helical_dom_sf Gene3D 146 266
IPR011990 TPR-like_helical_dom_sf Gene3D 360 481
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 203 237
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 343 377
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 168 202
IPR002885 Pentatricopeptide_rpt Pfam 168 212
IPR002885 Pentatricopeptide_rpt Pfam 410 458
IPR002885 Pentatricopeptide_rpt Pfam 272 321
IPR002885 Pentatricopeptide_rpt Pfam 343 391
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt Pfam 241 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 168 202
IPR011990 TPR-like_helical_dom_sf Gene3D 267 338
IPR011990 TPR-like_helical_dom_sf Gene3D 44 145
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 343 377
IPR002885 Pentatricopeptide_rpt Pfam 241 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 203 237
IPR011990 TPR-like_helical_dom_sf Gene3D 146 266
IPR011990 TPR-like_helical_dom_sf Gene3D 360 481
IPR002885 Pentatricopeptide_rpt Pfam 343 391
IPR002885 Pentatricopeptide_rpt Pfam 272 321
IPR002885 Pentatricopeptide_rpt Pfam 410 458
IPR002885 Pentatricopeptide_rpt Pfam 168 215
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 238 272
IPR002885 Pentatricopeptide_rpt TIGRFAM 241 274
IPR002885 Pentatricopeptide_rpt TIGRFAM 412 445
IPR002885 Pentatricopeptide_rpt TIGRFAM 448 474
IPR002885 Pentatricopeptide_rpt TIGRFAM 347 378
IPR002885 Pentatricopeptide_rpt TIGRFAM 205 238
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 309
IPR002885 Pentatricopeptide_rpt TIGRFAM 170 204

No CAZYmes available for this sequence

No external refs found!