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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011857 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011857_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003050_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003050_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR045215 | PPR_prot_At1g15510 | PANTHER | 235 | 532 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 235 | 269 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 409 | 502 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 184 | 285 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 134 | 168 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 310 | 333 |
| IPR046848 | E_motif | Pfam | 453 | 515 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 373 | 407 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 238 | 269 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 136 | 170 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 406 | 503 |
| IPR032867 | DYW_dom | Pfam | 551 | 643 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 281 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 335 | 383 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 133 | 177 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 336 | 370 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 104 | 183 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 286 | 402 |
| IPR032867 | DYW_dom | Pfam | 509 | 633 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 373 | 407 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 136 | 170 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 238 | 269 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 184 | 285 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 336 | 370 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 104 | 183 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 286 | 402 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 409 | 502 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 133 | 177 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 280 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 335 | 383 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 235 | 269 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 134 | 168 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 480 | 504 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 310 | 333 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 406 | 503 |
No CAZYmes available for this sequence
| No external refs found! |