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  5. Zm00001d003188_T001

Zm00001d003188_T001


Description : homolog of carrot EP3-3 chitinase


Gene families : OG_01_0002667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002667_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003188_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003188_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_280
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_594


Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006032 chitin catabolic process ISM GOs from InterProScan
MF GO:0008061 chitin binding ISM GOs from InterProScan
BP GO:0016998 cell wall macromolecule catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001002 Chitin-bd_1 ProSiteProfiles 33 70
IPR000726 Glyco_hydro_19_cat Pfam 94 229
IPR000726 Glyco_hydro_19_cat Pfam 236 282
IPR000726 Glyco_hydro_19_cat ProSitePatterns 216 226
IPR036861 Endochitinase-like_sf SUPERFAMILY 32 71
IPR016283 Glyco_hydro_19 PIRSF 3 282
IPR001002 Chitin-bd_1 SMART 35 68
IPR001002 Chitin-bd_1 Pfam 33 68
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 79 282
IPR018371 Chitin-binding_1_CS ProSitePatterns 39 58
IPR036861 Endochitinase-like_sf Gene3D 30 70
IPR036861 Endochitinase-like_sf Gene3D 30 70
IPR018371 Chitin-binding_1_CS ProSitePatterns 39 58
IPR001002 Chitin-bd_1 Pfam 33 68
IPR001002 Chitin-bd_1 SMART 35 68
IPR036861 Endochitinase-like_sf SUPERFAMILY 32 71
IPR000726 Glyco_hydro_19_cat ProSitePatterns 216 226
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 79 282
IPR016283 Glyco_hydro_19 PIRSF 3 282
IPR000726 Glyco_hydro_19_cat Pfam 94 229
IPR000726 Glyco_hydro_19_cat Pfam 236 282
IPR001002 Chitin-bd_1 ProSiteProfiles 33 70
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM18 38 283 5.6e-08 35 68
GH19 231 283 5.3e-74 81 282
No external refs found!