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  5. Zm00001d003227_T002

Zm00001d003227_T002


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007868 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007868_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003227_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003227_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_232


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR011990 TPR-like_helical_dom_sf Gene3D 266 357
IPR011990 TPR-like_helical_dom_sf Gene3D 358 467
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 559 589
IPR011990 TPR-like_helical_dom_sf Gene3D 597 672
IPR011990 TPR-like_helical_dom_sf Gene3D 743 816
IPR011990 TPR-like_helical_dom_sf Gene3D 673 742
IPR002885 Pentatricopeptide_rpt Pfam 331 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 853 887
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 750 784
IPR002885 Pentatricopeptide_rpt NCBIfam 856 886
IPR002885 Pentatricopeptide_rpt NCBIfam 612 645
IPR002885 Pentatricopeptide_rpt NCBIfam 276 309
IPR002885 Pentatricopeptide_rpt NCBIfam 209 240
IPR002885 Pentatricopeptide_rpt NCBIfam 717 751
IPR002885 Pentatricopeptide_rpt NCBIfam 787 813
IPR002885 Pentatricopeptide_rpt NCBIfam 457 490
IPR002885 Pentatricopeptide_rpt NCBIfam 561 587
IPR002885 Pentatricopeptide_rpt NCBIfam 346 377
IPR002885 Pentatricopeptide_rpt NCBIfam 491 525
IPR002885 Pentatricopeptide_rpt NCBIfam 752 785
IPR002885 Pentatricopeptide_rpt NCBIfam 648 680
IPR002885 Pentatricopeptide_rpt NCBIfam 310 343
IPR002885 Pentatricopeptide_rpt NCBIfam 894 925
IPR002885 Pentatricopeptide_rpt NCBIfam 428 455
IPR002885 Pentatricopeptide_rpt NCBIfam 682 716
IPR002885 Pentatricopeptide_rpt NCBIfam 526 560
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 343 377
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 680 714
IPR002885 Pentatricopeptide_rpt Pfam 781 813
IPR002885 Pentatricopeptide_rpt Pfam 607 638
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 656 918
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 524 558
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 785 819
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 645 679
IPR011990 TPR-like_helical_dom_sf Gene3D 115 265
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 308 342
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 610 644
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 891 925
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 489 523
IPR002885 Pentatricopeptide_rpt Pfam 273 321
IPR002885 Pentatricopeptide_rpt Pfam 644 693
IPR002885 Pentatricopeptide_rpt Pfam 714 763
IPR002885 Pentatricopeptide_rpt Pfam 894 939
IPR002885 Pentatricopeptide_rpt Pfam 456 502
IPR002885 Pentatricopeptide_rpt Pfam 523 572
IPR002885 Pentatricopeptide_rpt Pfam 428 451
IPR002885 Pentatricopeptide_rpt Pfam 209 238
IPR002885 Pentatricopeptide_rpt Pfam 856 882
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 715 749
IPR011990 TPR-like_helical_dom_sf Gene3D 821 975
IPR011990 TPR-like_helical_dom_sf Gene3D 468 596
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 715 749
IPR002885 Pentatricopeptide_rpt Pfam 894 939
IPR002885 Pentatricopeptide_rpt Pfam 644 692
IPR002885 Pentatricopeptide_rpt Pfam 461 502
IPR002885 Pentatricopeptide_rpt Pfam 273 320
IPR002885 Pentatricopeptide_rpt Pfam 523 572
IPR002885 Pentatricopeptide_rpt Pfam 714 762
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 891 925
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 308 342
IPR002885 Pentatricopeptide_rpt Pfam 209 238
IPR002885 Pentatricopeptide_rpt Pfam 856 882
IPR002885 Pentatricopeptide_rpt Pfam 428 451
IPR011990 TPR-like_helical_dom_sf Gene3D 821 975
IPR011990 TPR-like_helical_dom_sf Gene3D 468 596
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR011990 TPR-like_helical_dom_sf Gene3D 115 265
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 680 714
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 610 644
IPR002885 Pentatricopeptide_rpt TIGRFAM 491 525
IPR002885 Pentatricopeptide_rpt TIGRFAM 561 587
IPR002885 Pentatricopeptide_rpt TIGRFAM 310 343
IPR002885 Pentatricopeptide_rpt TIGRFAM 717 751
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 490
IPR002885 Pentatricopeptide_rpt TIGRFAM 612 645
IPR002885 Pentatricopeptide_rpt TIGRFAM 752 785
IPR002885 Pentatricopeptide_rpt TIGRFAM 648 680
IPR002885 Pentatricopeptide_rpt TIGRFAM 682 716
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 309
IPR002885 Pentatricopeptide_rpt TIGRFAM 209 240
IPR002885 Pentatricopeptide_rpt TIGRFAM 856 886
IPR002885 Pentatricopeptide_rpt TIGRFAM 894 925
IPR002885 Pentatricopeptide_rpt TIGRFAM 346 377
IPR002885 Pentatricopeptide_rpt TIGRFAM 428 455
IPR002885 Pentatricopeptide_rpt TIGRFAM 526 560
IPR002885 Pentatricopeptide_rpt TIGRFAM 787 813
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 524 558
IPR002885 Pentatricopeptide_rpt Pfam 781 813
IPR002885 Pentatricopeptide_rpt Pfam 607 638
IPR011990 TPR-like_helical_dom_sf Gene3D 266 357
IPR011990 TPR-like_helical_dom_sf Gene3D 358 467
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 645 679
IPR011990 TPR-like_helical_dom_sf Gene3D 597 672
IPR011990 TPR-like_helical_dom_sf Gene3D 743 816
IPR011990 TPR-like_helical_dom_sf Gene3D 673 742
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 489 523
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 656 918
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 853 887
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 559 589
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 343 377
IPR002885 Pentatricopeptide_rpt Pfam 331 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 785 819
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 750 784

No CAZYmes available for this sequence

No external refs found!