Zm00001d003345_T001

Description : Small nuclear ribonucleoprotein family protein

Gene families : OG_01_0006042 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006042_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003345_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003345_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_63
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_178

Type	GO Term	Name	Evidence	Source
BP	GO:0000387	spliceosomal snRNP assembly	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001163	Sm_dom_euk/arc	Pfam	5	69
IPR001163	Sm_dom_euk/arc	SMART	5	70
IPR027141	LSm4/Sm_D1/D3	PANTHER	1	109
IPR047575	Sm	ProSiteProfiles	2	74
IPR034102	Sm_D1	CDD	2	93
IPR010920	LSM_dom_sf	SUPERFAMILY	4	114
IPR034102	Sm_D1	CDD	2	93
IPR027141	LSm4/Sm_D1/D3	PANTHER	1	110
IPR010920	LSM_dom_sf	SUPERFAMILY	4	114
IPR001163	Sm_dom_euk/arc	Pfam	5	69
IPR001163	Sm_dom_euk/arc	SMART	5	70

No CAZYmes available for this sequence

External Links

No external refs found!