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  5. Zm00001d003359_T001

Zm00001d003359_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0009565 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009565_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003359_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003359_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_36
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_48


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 176 210
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 94 128
IPR002885 Pentatricopeptide_rpt Pfam 242 271
IPR011990 TPR-like_helical_dom_sf Gene3D 154 288
IPR002885 Pentatricopeptide_rpt Pfam 94 142
IPR002885 Pentatricopeptide_rpt Pfam 176 224
IPR002885 Pentatricopeptide_rpt NCBIfam 180 212
IPR002885 Pentatricopeptide_rpt NCBIfam 248 275
IPR002885 Pentatricopeptide_rpt NCBIfam 213 247
IPR002885 Pentatricopeptide_rpt NCBIfam 96 129
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR011990 TPR-like_helical_dom_sf Gene3D 25 153
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 176 210
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 94 128
IPR002885 Pentatricopeptide_rpt Pfam 242 271
IPR011990 TPR-like_helical_dom_sf Gene3D 154 288
IPR002885 Pentatricopeptide_rpt TIGRFAM 96 129
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 275
IPR002885 Pentatricopeptide_rpt TIGRFAM 180 212
IPR002885 Pentatricopeptide_rpt TIGRFAM 213 247
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR002885 Pentatricopeptide_rpt Pfam 94 142
IPR002885 Pentatricopeptide_rpt Pfam 176 224
IPR011990 TPR-like_helical_dom_sf Gene3D 25 153

No CAZYmes available for this sequence

No external refs found!