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  5. Zm00001d003556_T003

Zm00001d003556_T003


Description : Translation initiation factor 2, small GTP-binding protein


Gene families : OG_01_0006811 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006811_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d003556_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d003556_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_228
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_191


Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity ISM GOs from InterProScan
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
BP GO:0006413 translational initiation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036925 TIF_IF2_dom3_sf Gene3D 490 570
IPR000795 T_Tr_GTP-bd_dom ProSiteProfiles 191 361
IPR009000 Transl_B-barrel_sf SUPERFAMILY 618 720
IPR009000 Transl_B-barrel_sf SUPERFAMILY 365 447
IPR005225 Small_GTP-bd_dom NCBIfam 194 347
IPR000795 T_Tr_GTP-bd_dom Pfam 196 352
IPR023115 TIF_IF2_dom3 Pfam 478 568
IPR036925 TIF_IF2_dom3_sf SUPERFAMILY 485 621
IPR000178 TF_IF2_bacterial-like Hamap 7 721
IPR027417 P-loop_NTPase SUPERFAMILY 188 360
IPR000178 TF_IF2_bacterial-like NCBIfam 168 719
IPR044145 IF2_II CDD 367 462
IPR015760 TIF_IF2 PANTHER 86 725
IPR027417 P-loop_NTPase Gene3D 189 363
IPR027417 P-loop_NTPase SUPERFAMILY 188 360
IPR009000 Transl_B-barrel_sf SUPERFAMILY 618 720
IPR036925 TIF_IF2_dom3_sf Gene3D 490 570
IPR027417 P-loop_NTPase Gene3D 189 363
IPR005225 Small_GTP-bd_dom TIGRFAM 194 347
IPR023115 TIF_IF2_dom3 Pfam 478 568
IPR015760 TIF_IF2 PANTHER 68 726
IPR009000 Transl_B-barrel_sf SUPERFAMILY 365 447
IPR000178 TF_IF2_bacterial-like TIGRFAM 168 719
IPR000178 TF_IF2_bacterial-like Hamap 7 721
IPR000795 T_Tr_GTP-bd_dom Pfam 196 353
IPR044145 IF2_II CDD 367 462
IPR000795 T_Tr_GTP-bd_dom ProSiteProfiles 191 361
IPR036925 TIF_IF2_dom3_sf SUPERFAMILY 485 621

No CAZYmes available for this sequence

No external refs found!