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  5. Zm00001d004154_T002

Zm00001d004154_T002


Description : cleavage and polyadenylation specificity factor 160


Gene families : OG_01_0008634 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008634_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004154_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004154_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C Pfam 1070 1197
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 62 448
IPR018846 Cleavage/polyA-sp_fac_asu_N Pfam 178 703
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1009 1214
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 567 1007
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1009 1214
IPR018846 Cleavage/polyA-sp_fac_asu_N Pfam 177 701
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 62 448
IPR004871 Cleavage/polyA-sp_fac_asu_C Pfam 1070 1197
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 567 1007

No CAZYmes available for this sequence

No external refs found!