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  5. Zm00001d004442_T001

Zm00001d004442_T001


Description : ATP binding cassette subfamily B19


Gene families : OG_01_0030532 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0030532_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004442_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004442_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_35


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase SUPERFAMILY 1268 1508
IPR003439 ABC_transporter-like_ATP-bd Pfam 631 779
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1271 1507
IPR011527 ABC1_TM_dom ProSiteProfiles 944 1230
IPR027417 P-loop_NTPase Gene3D 602 850
IPR027417 P-loop_NTPase Gene3D 1257 1511
IPR003439 ABC_transporter-like_ATP-bd Pfam 1289 1437
IPR036640 ABC1_TM_sf SUPERFAMILY 278 594
IPR017871 ABC_transporter-like_CS ProSitePatterns 1410 1424
IPR036640 ABC1_TM_sf Gene3D 1232 1512
IPR027417 P-loop_NTPase SUPERFAMILY 604 847
IPR011527 ABC1_TM_dom Pfam 291 561
IPR011527 ABC1_TM_dom Pfam 944 1213
IPR036640 ABC1_TM_sf Gene3D 278 852
IPR017871 ABC_transporter-like_CS ProSitePatterns 751 765
IPR011527 ABC1_TM_dom ProSiteProfiles 291 577
IPR036640 ABC1_TM_sf Gene3D 923 1231
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 612 848
IPR036640 ABC1_TM_sf SUPERFAMILY 932 1250
IPR003593 AAA+_ATPase SMART 639 825
IPR003593 AAA+_ATPase SMART 1298 1484
IPR039421 Type_1_exporter PANTHER 917 1509
IPR036640 ABC1_TM_sf Gene3D 278 852
IPR003439 ABC_transporter-like_ATP-bd Pfam 631 779
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 612 848
IPR011527 ABC1_TM_dom ProSiteProfiles 944 1230
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1271 1507
IPR036640 ABC1_TM_sf Gene3D 923 1231
IPR011527 ABC1_TM_dom ProSiteProfiles 291 577
IPR027417 P-loop_NTPase SUPERFAMILY 1268 1508
IPR027417 P-loop_NTPase Gene3D 602 850
IPR027417 P-loop_NTPase Gene3D 1257 1511
IPR036640 ABC1_TM_sf SUPERFAMILY 932 1250
IPR003439 ABC_transporter-like_ATP-bd Pfam 1289 1437
IPR017871 ABC_transporter-like_CS ProSitePatterns 1410 1424
IPR036640 ABC1_TM_sf Gene3D 1232 1512
IPR036640 ABC1_TM_sf SUPERFAMILY 278 594
IPR003593 AAA+_ATPase SMART 639 825
IPR003593 AAA+_ATPase SMART 1298 1484
IPR011527 ABC1_TM_dom Pfam 944 1213
IPR011527 ABC1_TM_dom Pfam 291 561
IPR017871 ABC_transporter-like_CS ProSitePatterns 751 765
IPR027417 P-loop_NTPase SUPERFAMILY 604 847

No CAZYmes available for this sequence

No external refs found!